I wanted to know what those bright spots inside the ciliates are, so I read carefully about phase contrast, ciliate anatomy and also asked our expert - Bruce.
The following is a private message that I sent to Bruce. He agrees with my 2nd guess that those bright spots might be food vacuoles (my 1st guess, macronucleus, was probably wrong since it should be darker in positive phase contrast). Bruce also added that macronucleus may be difficult to see in well-fed ciliates.
Start quoting my message to Bruce:
I read about phase contrast carefully and actually think that bright spot may be food vacuole. I think Carlos is using dark (positive) phase, so macronucleus should have darker color than other structures as it has higher refractive index - it should not appear that bright.
Food vacuole has mostly water, so its color would be pale in positive phase contrast, like what we saw. Also, if you look at Carlos' video more carefully, those ciliates do seem to have pale color contratile vacuole (CV) at the end of their bodies (and you can see them contracting). The CV's color is similar to that big bright spot, which suggests that the bright spot contains water - thus food vacuole (FV) seems more likely. Also, some bright spots seem to have dark inner contents, which would make sense if those are food vacuoles containing water and denser food particles?
Carlos showed us brightfield (oblique+pol) video of the same type of ciliate:
https://www.youtube.com/watch?v=_jKu3jqUqJE
I saw similar looking CV and FV in phase and brightfield. In brightfield, I saw some empty-looking vacuoles (food vacuoles) that seem to correlate to size and position of those bright spots.
End of quoted message.
Edit: I still consider my guess of food/digestive vacuoles a guess though. This is because in phase contrast, color is related to light path difference (LPD) and LPD = thickness x refractive index. Since we are not sure about thickness and thickness can be so different that it can change colors/LPD around, I would still call it a guess.