You can squeeze light into a surprisingly small space as done here. With some subjects, like these scales, it works well. With other subjects it will be too strong from the sides. So if you can get at least a few mm of working distance it is much more versatile. This old link shows how I did quite a few of this type of subject on a microscope:
http://www.photomacrography1.net/forum/ ... php?t=4869
Cover slips are needed for nearly all biological objectives over about NA 0.40. (But with most good "biological" objectives over 0.40 the working distances are too small to do this on a regular basis). If you have a bit of working distance it is not impossible to use external lights with a some cover slipped subjects but it is a hassle and you
really need to pay attention to reflections.
Vertical illuminators can direct light through the objective, so working distances are much less of a problem. But epi-brightfield done this way is a very "stark", frontal type of light. Not really attractive for most subjects. And you really need to use crossed polarization to get around the flare issues.